After the latest Shopify CLI updates, I am experiencing Upload Errors with assets/country-flags.css, assets/sections.js, and assets/theme.js

After the latest Shopify CLI updates, I am experiencing Upload Errors with assets/country-flags.css, assets/sections.js, and assets/theme.js.
I have already tried cloning the theme via Git, but I am still facing the same issue. Does anyone know how to help me?

Hi - if you run shopify theme check does it return any errors related to this files?