After upgrading CLI to 3.78.1 it always generates an error on deploy

Shopify CLI and Libraries
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When running shopify app deploy with CLI version of 3.76.0, everything works fine. Then only changing one thing, CLI version to latest 3.78.1 and running shopify app deploy again, it generates the error at the end, The user aborted a request.. (I did not press any key or aborted the deploy in any way).

Here are the logs, logs.txt - Google Drive

There is another issue here as well. I have 3 config files, I ran the command of shopify app config use dev-admin to set the config to dev-admin (which is shopify.app.dev-admin.toml file), before running the deploy command, which is shopify app deploy --config dev-admin --verbose. It works fine, if there is no error. Whenever there is an error, it automatically switches to shopify.app.dev.toml config which is generating the last error where it says No app with client ID ff6b91281a828ab052867110db52846f found. Which is wrong, in case of error it should not switch config, but should still use the one we are passing through --config flag.

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Hi @Sam_Smith, it looks like you’re bumping into a CLI-enforced timeout due to the size of your app. This is not correct behavior by the CLI, so we are making some changes (1, 2) to be more lenient on the timeouts.

The issue with the wrong client ID being displayed still needs investigation, but I wanted to let you know that we are working on the main behavioral issue you noted.

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Thank you for the quick resolution and support. :raising_hands: